Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
Pyrrolidinone, dimethyl- Pyrrolidinone, dimethyl- 60544-40-3
4(5)-CYANOMETHYLIMIDAZOLE 4(5)-CYANOMETHYLIMIDAZOLE 18502-05-1 C5H5N3
1H-1,2,3-TRIAZOLE, 4-BROMO-1-METHYL- 1H-1,2,3-TRIAZOLE, 4-BROMO-1-METHYL- 13273-53-5 C3H4BrN3
3-CYCLOPENTYLACRYLONITRILE 3-CYCLOPENTYLACRYLONITRILE 591769-05-0 C8H11N
4-METHYL-1H-1,2,3-TRIAZOLE 4-METHYL-1H-1,2,3-TRIAZOLE 27808-16-8 C3H5N3
4-Amino-8-bromo-2-chloroquinazoline 4-Amino-8-bromo-2-chloroquinazoline 956100-62-2 C8H5BrClN3
Ethyl 3-amino-6-(trifluoromethyl)imidazo-[1,2-a]pyridine-2-carboxylate Ethyl 3-amino-6-(trifluoromethyl)imidazo-[1,2-a]pyridine-2-carboxylate 1171919-18-8 C11H10F3N3O2
(2S,4R)-1-Boc-2-cyano-4-hydroxypyrrolidine (2S,4R)-1-Boc-2-cyano-4-hydroxypyrrolidine 483366-12-7 C10H16N2O3
3-Cyano-4-methylphenylboronic acid, pinacol ester 3-Cyano-4-methylphenylboronic acid, pinacol ester 1220219-11-3 C14H18BNO2
(S)-tert-butyl 2-(1H-imidazol-2-yl)pyrrolidine-1-carboxylate (S)-tert-butyl 2-(1H-imidazol-2-yl)pyrrolidine-1-carboxylate 1007882-58-7 C12H19N3O2
4-bromooxazole 4-bromooxazole 1240598-57-5 C3H2BrNO
(S)-2-[(Diphenylphosphino)methyl]pyrrolidine, min. 97% (S)-2-[(Diphenylphosphino)methyl]pyrrolidine, min. 97% 60261-46-3 C17H20NP
7-chloro-2-(chloromethyl)-4H-pyrido[1,2-a]pyrimidin-4-one(SALTDATA: FREE) 7-chloro-2-(chloromethyl)-4H-pyrido[1,2-a]pyrimidin-4-one(SALTDATA: FREE) 162469-87-6 C9H6Cl2N2O
1,3-Dicyclohexylbenzimidazolium chloride, min. 97% 1,3-Dicyclohexylbenzimidazolium chloride, min. 97% 1034449-15-4 C19H27ClN2
3-cyclopropyl-1H-1,2,4-triazole(SALTDATA: FREE) 3-cyclopropyl-1H-1,2,4-triazole(SALTDATA: FREE) 1211390-33-8 C5H7N3
1-Cyclopropyl-6-fluoro-1,4-dihydro-8-methoxy-7-[(4aR,7aR)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-3-quinolinecarboxylic acid 1-Cyclopropyl-6-fluoro-1,4-dihydro-8-methoxy-7-[(4aR,7aR)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-3-quinolinecarboxylic acid 268545-13-7 C21H24FN3O4
5-Ethyl-3-(pyrrolidin-3-ylmethoxymethyl)-[1,2,4]oxadiazole 5-Ethyl-3-(pyrrolidin-3-ylmethoxymethyl)-[1,2,4]oxadiazole 914299-45-9 C10H17N3O2
Pyrrolidine, 2-(2-hydrazinylethyl)-1-methyl-, hydrochloride (1:1) Pyrrolidine, 2-(2-hydrazinylethyl)-1-methyl-, hydrochloride (1:1) 1269292-40-1 C7H18ClN3
1,2,4-triazole potassium salt 1,2,4-triazole potassium salt C2H2KN3
1-(diethoxyMethyl)-4,5-diMethyl-1H-iMidazole 1-(diethoxyMethyl)-4,5-diMethyl-1H-iMidazole 74483-00-4 C10H18N2O2
1-(Phenylsulfonyl)-3-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrrolo[2,3-c]pyridine 1-(Phenylsulfonyl)-3-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrrolo[2,3-c]pyridine 1174038-65-3 C19H21BN2O4S
1,3-diMethyliMidazoliuM dicyanaMide 1,3-diMethyliMidazoliuM dicyanaMide 869301-19-9 C7H9N5
1-tert-Butyl-1H-pyrazole 1-tert-Butyl-1H-pyrazole 15754-60-6 C7H12N2
1-(3-Methoxypropyl)-4-piperidinamine 1-(3-Methoxypropyl)-4-piperidinamine 179474-79-4 C9H20N2O
1-tert-butyl-3-phenyl-1H-pyrazole 1-tert-butyl-3-phenyl-1H-pyrazole 1269293-29-9 C13H16N2
1H-Pyrazolo[4,3-b]pyridine-6-carboxylicacid 1H-Pyrazolo[4,3-b]pyridine-6-carboxylicacid 1256807-59-6 C7H5N3O2
2-broMo-5-Methyl-oxazole 2-broMo-5-Methyl-oxazole 129053-67-4 C4H4BrNO
IMidazo[1,2-a]pyridin-8-aMine, 5-broMo- IMidazo[1,2-a]pyridin-8-aMine, 5-broMo- 1357947-00-2 C7H6BrN3
IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro- IMidazo[1,2-a]pyridine-2-carboxylic acid, 7-chloro- 1020038-42-9 C8H5ClN2O2
4-chloro-2-fluoro-5-iodopyridine 4-chloro-2-fluoro-5-iodopyridine 1184914-20-2 C5H2ClFIN
(S)-N-(Pyrrolidin-3-yl)acetaMide hydrochloride (S)-N-(Pyrrolidin-3-yl)acetaMide hydrochloride 1246277-44-0 C6H13ClN2O
3-fluoro-4-(4-Methyl-1H-iMidazol-1-yl)benzoic acid 3-fluoro-4-(4-Methyl-1H-iMidazol-1-yl)benzoic acid 1243205-04-0 C11H9FN2O2
3-(1-chloroH-pyrrolo[1,2-a]pyrazin-6-yl)cyclobutanone 3-(1-chloroH-pyrrolo[1,2-a]pyrazin-6-yl)cyclobutanone 936901-72-3 C10H8ClN3O
N-Cyclopropyl-3-oxetanamine N-Cyclopropyl-3-oxetanamine 1340518-89-9 C6H11NO
8-BroMo-2,3-dihydro-[1,4]dioxino[2,3-b]pyridine 8-BroMo-2,3-dihydro-[1,4]dioxino[2,3-b]pyridine 643067-83-8 C7H6BrNO2
2-Ethyl-2-oxazoline 2-Ethyl-2-oxazoline 10431-98-8 C5H9NO
1-Methyl-5-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-benzo[d]iMidazol-2(3H)-one 1-Methyl-5-(4,4,5,5-tetraMethyl-1,3,2-dioxaborolan-2-yl)-1H-benzo[d]iMidazol-2(3H)-one 1187968-73-5 C14H19BN2O3
8-BroMo-3-iodo-iMidazo[1,2-a]pyridine 8-BroMo-3-iodo-iMidazo[1,2-a]pyridine 1232038-69-5 C7H4BrIN2
N-(4-Nitrophenyl)-4-(3-pyridyl)-2-pyriMidineaMine N-(4-Nitrophenyl)-4-(3-pyridyl)-2-pyriMidineaMine 181065-58-7 C15H11N5O2
3-(2-chloropyriMidin-4-yl)-1-Methylindole 3-(2-chloropyriMidin-4-yl)-1-Methylindole 1032452-86-0 C13H10ClN3
MMB-2201 MMB-2201 1616253-26-9 C20H27FN2O3
1,2,4-Triazolylsodium 1,2,4-Triazolylsodium 41253-21-8 C2H4N3Na
4-(4-(Trifluoromethoxy)phenyl)piperidine 4-(4-(Trifluoromethoxy)phenyl)piperidine 180160-91-2 C12H14F3NO
Pyridine,2,2'-(1,3-phenylene)bis- Pyridine,2,2'-(1,3-phenylene)bis- 136538-84-6 C16H12N2
1(tertbutoxycarbonyl)4,4difluoropyrrolidine3carboxylic acid 1(tertbutoxycarbonyl)4,4difluoropyrrolidine3carboxylic acid 1196145-11-5 C10H15F2NO4
2,6-Bis[(4R)-benzyl-2-oxazolin-2-yl]pyridine 2,6-Bis[(4R)-benzyl-2-oxazolin-2-yl]pyridine 365215-38-9 C25H23N3O2
5-BroMo-2-chloro-thiazolo[5,4-b]pyridine 5-BroMo-2-chloro-thiazolo[5,4-b]pyridine 1355241-50-7 C6H2BrClN2S
propan-2-one compound with imidazo[1,2-a]pyridine (1:1) propan-2-one compound with imidazo[1,2-a]pyridine (1:1) 116355-08-9 C10H10N2O
5-AMino-2-chloropyriMidine-4-carboxaMide 5-AMino-2-chloropyriMidine-4-carboxaMide 189747-29-3 C5H5ClN4O
5-METHYL-1,2,4-OXADIAZOL-3-AMINE 5-METHYL-1,2,4-OXADIAZOL-3-AMINE 40483-47-4 C3H5N3O
4-(CHLOROMETHYL)-1-TRITYL-1H-IMIDAZOLE 4-(CHLOROMETHYL)-1-TRITYL-1H-IMIDAZOLE 103057-10-9 C23H19ClN2
BTL benzotriazole BTL benzotriazole
Benzotriazole derivative Benzotriazole derivative
3-bromo-1-(oxan-2-yl)-1h-pyrazole 3-bromo-1-(oxan-2-yl)-1h-pyrazole 1044270-96-3 C8H11BrN2O
9-[1,1'-Biphenyl]-3-yl-9'-[1,1'-biphenyl]-4-yl-3,3'-bi-9H-carbazole 9-[1,1'-Biphenyl]-3-yl-9'-[1,1'-biphenyl]-4-yl-3,3'-bi-9H-carbazole 1643479-47-3 C48H32N2
N,N-Dimethyl-phosphoramidochloridic acid [(2S,6R)-6-(3,4-dihydro-5-methyl-2,4-dioxo-1(2H)-pyrimidinyl)-4-(triphenylmethyl)-2-morpholinyl]methyl ester N,N-Dimethyl-phosphoramidochloridic acid [(2S,6R)-6-(3,4-dihydro-5-methyl-2,4-dioxo-1(2H)-pyrimidinyl)-4-(triphenylmethyl)-2-morpholinyl]methyl ester 956139-30-3 C31H34ClN4O5P
6-chloro-1,3-dihydro-5-iodo-2H-Imidazo[4,5-b]pyridine-2-thione 6-chloro-1,3-dihydro-5-iodo-2H-Imidazo[4,5-b]pyridine-2-thione 1394373-25-1 C6H3ClIN3S
1-bromo-4-(trifluoromethyl)cyclohexane 1-bromo-4-(trifluoromethyl)cyclohexane 30129-20-5 C7H10BrF3
5-Trifluoromethyl-imidazo[1,2-a]pyridine-2-carbaldehyde 5-Trifluoromethyl-imidazo[1,2-a]pyridine-2-carbaldehyde 881841-26-5 C9H5F3N2O
Morpholine,4,4'-(phenylphosphinylidene)bis- (9CI) Morpholine,4,4'-(phenylphosphinylidene)bis- (9CI) 37624-67-2 C14H21N2O3P
7H-Pyrrolo[1,2-a]imidazol-7-one,5,6-dihydro-(9CI) 7H-Pyrrolo[1,2-a]imidazol-7-one,5,6-dihydro-(9CI) 112513-82-3 C6H6N2O
3-Pyrrolidinamine,4-fluoro-,dihydrochloride,trans-(9CI) 3-Pyrrolidinamine,4-fluoro-,dihydrochloride,trans-(9CI) 125197-40-2 C4H9FN2.2ClH
1H-Benzimidazole,2-ethenyl-(9CI) 1H-Benzimidazole,2-ethenyl-(9CI) 14984-26-0 C9H8N2
2H-Imidazo[4,5-b]pyridin-2-one,5-amino-1,3-dihydro-(9CI) 2H-Imidazo[4,5-b]pyridin-2-one,5-amino-1,3-dihydro-(9CI) 40851-87-4 C6H6N4O
2-Pyrrolidineethanamine,1-methyl-,(2R)-(9CI) 2-Pyrrolidineethanamine,1-methyl-,(2R)-(9CI) 422545-96-8 C7H16N2
1H-Imidazo[4,5-c]pyridine,4-methoxy-(9CI) 1H-Imidazo[4,5-c]pyridine,4-methoxy-(9CI) 158089-18-0 C7H7N3O
1H-Pyrrolo[2,3-d]pyrimidine-5-carboxylicacid,2-amino-4,7-dihydro-4-oxo- 1H-Pyrrolo[2,3-d]pyrimidine-5-carboxylicacid,2-amino-4,7-dihydro-4-oxo- 92636-62-9 C7H6N4O3
3-Pyridinecarboxamide,2-amino-5-bromo-N-cyclopropyl-(9CI) 3-Pyridinecarboxamide,2-amino-5-bromo-N-cyclopropyl-(9CI) 781642-04-4 C9H10BrN3O
2,6-Pyridinediamine,1-oxide(9CI) 2,6-Pyridinediamine,1-oxide(9CI) 146538-81-0 C5H7N3O
3-Chloro-1,2,4-triazole 3-Chloro-1,2,4-triazole 6818-99-1 C2H2ClN3
N-Methyl-Cyclazodone N-Methyl-Cyclazodone
(R)-(-)-1-Benzyl-3-aminopyrrolidine (R)-(-)-1-Benzyl-3-aminopyrrolidine 114715-39-8 C11H16N2
Poly urethane Poly urethane 51852-81-4 C16H22N2O5
3,5-diphenyloxazole 3,5-diphenyloxazole 2039-49-8 C15H11NO
1-(4-Bromophenyl)-1H-pyrazole 1-(4-Bromophenyl)-1H-pyrazole 13788-92-6 C9H7BrN2
N,N-diethyl-3-methyl-4-[(5-nitro-1,3-thiazol-2-yl)diazenyl]aniline N,N-diethyl-3-methyl-4-[(5-nitro-1,3-thiazol-2-yl)diazenyl]aniline 70693-64-0 C14H17N5O2S
(S)-N-Phenyl-2-pyrrolidinecarboxamide (S)-N-Phenyl-2-pyrrolidinecarboxamide 64030-43-9 C11H14N2O
2,4-DICHLORO-6-FLUOROQUINAZOLINE 2,4-DICHLORO-6-FLUOROQUINAZOLINE 134517-57-0 C8H3Cl2FN2
2-Methyl-4-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-benzonitrile
2-Methyl-4-(4,4,5,5-tetramethyl-[1,3,2]dioxaborolan-2-yl)-benzonitrile 775351-54-7 C14H18BNO2
6-Bromo-2-iodoquinazoline 6-Bromo-2-iodoquinazoline 882670-93-1 C8H4BrIN2
4-Trifluoromethyl-pyridine-2-carbaldehyde 4-Trifluoromethyl-pyridine-2-carbaldehyde 132470-83-8 C7H4F3NO
4-(Trifluoromethyl)pyridine-2-thiol 4-(Trifluoromethyl)pyridine-2-thiol 121307-79-7 C6H4F3NS
2H-PYRIMIDO[1,2-B]PYRIDAZIN, 2-CHLORO-7,8-DIMETHYL- 2H-PYRIMIDO[1,2-B]PYRIDAZIN, 2-CHLORO-7,8-DIMETHYL- 17412-26-9 C8H8ClN3
6-Aminoindazole 6-Aminoindazole 6967-12-0 C7H7N3
Azacyclotridecan-2-one Azacyclotridecan-2-one 947-04-6 C12H23NO
(S,S)-(-)-2,2'-ISOPROPYLIDENEBIS(4-TERT-BUTYL-2-OXAZOLINE) (S,S)-(-)-2,2'-ISOPROPYLIDENEBIS(4-TERT-BUTYL-2-OXAZOLINE) 131833-93-7 C17H30N2O2
4-(3-BROMO-PHENYL)-THIAZOL-2-YLAMINE 4-(3-BROMO-PHENYL)-THIAZOL-2-YLAMINE 105512-81-0 C9H7BrN2S
7-(4-tert-Butylphenyl)-2-methyl-1H-indene 7-(4-tert-Butylphenyl)-2-methyl-1H-indene 245653-52-5 C20H22
6-Methylimidazo[2,1-b]thiazole 6-Methylimidazo[2,1-b]thiazole 3835-41-4 C6H6N2S
2,4-Dimethylquinazoline 2,4-Dimethylquinazoline 703-63-9 C10H10N2
4-Methyl-6-ethoxypyrimidine-2-amine 4-Methyl-6-ethoxypyrimidine-2-amine 7749-48-6 C7H11N3O
5-NITRO-1H-BENZOIMIDAZOLE-2-CARBOXYLIC ACID 5-NITRO-1H-BENZOIMIDAZOLE-2-CARBOXYLIC ACID 73903-18-1 C8H5N3O4
1-ALLYLPYRIMIDINE-2,4(1H,3H)-DIONE 1-ALLYLPYRIMIDINE-2,4(1H,3H)-DIONE 25855-26-9 C7H8N2O2
2,4-DICHLORO-7-BROMOQUINAZOLINE 2,4-DICHLORO-7-BROMOQUINAZOLINE 959237-68-4 C8H3BrCl2N2
8-METHYLIMIDAZO[1,2-A]PYRIDINE 8-METHYLIMIDAZO[1,2-A]PYRIDINE 874-10-2 C8H8N2
3-Bromo-5-chloroimidazo[1,2-a]pyridine 3-Bromo-5-chloroimidazo[1,2-a]pyridine 1260656-94-7 C7H4BrClN2
6-Bromo-8-methyl-imidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 6-Bromo-8-methyl-imidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 907945-82-8 C11H11BrN2O2
alpha-Glucosyl Hesperidin alpha-Glucosyl Hesperidin 161713-86-6 C34H44O20
3-[1-(4-Amino-butyl)-1H-[1,2,3]triazol-4-yl]-phenylamine 3-[1-(4-Amino-butyl)-1H-[1,2,3]triazol-4-yl]-phenylamine 1626413-52-2 C12H17N5
5-bromo-4-methylnicotinonitrile 5-bromo-4-methylnicotinonitrile 890092-52-1 C7H5BrN2
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