Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
2-AMino-3-(pyrrolidin-3-yl)propanoic acid 2-AMino-3-(pyrrolidin-3-yl)propanoic acid 1313016-75-9 C7H14N2O2
6-Methoxy-iMidazo[1,2-b]pyridazine-2-carboxylic acid 6-Methoxy-iMidazo[1,2-b]pyridazine-2-carboxylic acid 64068-09-3 C8H7N3O3
4,4',4''-(1,3,5-Triazine-2,4,6-triyl)trianiline 4,4',4''-(1,3,5-Triazine-2,4,6-triyl)trianiline 14544-47-9 C21H18N6
1-Ethyl-3-methylimidazolium bis(fluorosulfonyl)imide 1-Ethyl-3-methylimidazolium bis(fluorosulfonyl)imide 235789-75-0 C6H11F2N3O4S2
4-Bromo-1-pyrrolidin-3-yl-1H-pyrazole 4-Bromo-1-pyrrolidin-3-yl-1H-pyrazole 1247439-25-3 C7H10BrN3
Sulfuric acid, mono[(1R,2S,5R)-7-oxo-2-[[[(3S)-3-pyrrolidinyloxy]amino]carbonyl]-1,6-diazabicyclo[3.2.1]oct-6-yl] ester Sulfuric acid, mono[(1R,2S,5R)-7-oxo-2-[[[(3S)-3-pyrrolidinyloxy]amino]carbonyl]-1,6-diazabicyclo[3.2.1]oct-6-yl] ester 1452458-72-8 C11H18N4O7S
Tramazoline Tramazoline 1082-57-1 C13H17N3
5-Bromo-1,3-dimethyl-1H-pyrazole 5-Bromo-1,3-dimethyl-1H-pyrazole 5744-70-7 C5H7BrN2
5,6,7,8,9,10-hexahydrocycloocta[b]pyridine 5,6,7,8,9,10-hexahydrocycloocta[b]pyridine 28712-60-9 C11H15N
1,3-Benzenedicarboxylic acid, 4,6-di-1H-imidazol-1-yl- 1,3-Benzenedicarboxylic acid, 4,6-di-1H-imidazol-1-yl- 2374700-80-6 C14H10N4O4
2-(4-methoxyphenyl)-2-pyrrolidin-1-ylacetonitrile 2-(4-methoxyphenyl)-2-pyrrolidin-1-ylacetonitrile 15190-12-2 C13H16N2O
5-methyl-2-phenyl-1H-imidazole-4-carboxylic acid 5-methyl-2-phenyl-1H-imidazole-4-carboxylic acid 28824-94-4 C11H10N2O2
dichlorobis(3-pyridylcarboxamide-N1)cobalt dichlorobis(3-pyridylcarboxamide-N1)cobalt 6856-47-9 C12H12Cl2CoN4O2
(S)-3-methyl-2-(pyrrolidin-2-yl)pyridine (S)-3-methyl-2-(pyrrolidin-2-yl)pyridine 1213567-87-3 C10H14N2
4,4'-((2-methyl-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine 4,4'-((2-methyl-1,4-phenylene)bis(ethene-2,1-diyl))dipyridine 2446431-88-3 C21H18N2
1-benzyl-4-pyrrolidin-1-ylpiperidine, dihydrochloride 1-benzyl-4-pyrrolidin-1-ylpiperidine, dihydrochloride 4983-38-4 C16H26Cl2N2
1-Methyl-1,2,3-triazole 1-Methyl-1,2,3-triazole 16681-65-5 C3H5N3
(2S,4R)-4-Fluoropyrrolidine-2-carboxylic acid (2S,4R)-4-Fluoropyrrolidine-2-carboxylic acid 21156-44-5 C5H8FNO2
(2S,5R)-7-oxo-2-((((R)-pyrrolidin-3-yl)oxy)carbamoyl)-1,6-diazabicyclo[3.2.1]octan-6-yl hydrogen sulfate (2S,5R)-7-oxo-2-((((R)-pyrrolidin-3-yl)oxy)carbamoyl)-1,6-diazabicyclo[3.2.1]octan-6-yl hydrogen sulfate 1452458-70-6 C11H18N4O7S
1H-Benzimidazole, 2,2',2'',2'''-[1,1'-biphenyl]-3,3',5,5'-tetrayltetrakis- 1H-Benzimidazole, 2,2',2'',2'''-[1,1'-biphenyl]-3,3',5,5'-tetrayltetrakis- 1572338-07-8 C40H26N8
Pyridine, 5-chloro-2-(chloromethyl)-3-[[[tris(1-methylethyl)silyl]oxy]methyl]- Pyridine, 5-chloro-2-(chloromethyl)-3-[[[tris(1-methylethyl)silyl]oxy]methyl]- 1456803-67-0 C16H27Cl2NOSi
1928707-64-5 1928707-64-5 1928707-64-5 C14H14FN5O2
3-Phenyl-1H-pyrazole 3-Phenyl-1H-pyrazole 2458-26-6 C9H8N2
1H-Pyrazole-3-carboxamide, 4-[5-[1,5-dihydro-3-[[(2-hydroxyethyl)amino]carbonyl]-5-oxo-1-(tetrahydro-1,1-dioxido-3-thienyl)-4H-pyrazol-4-ylidene]-1,3-pentadien-1-yl]-5-hydroxy-N-(2-hydroxyethyl)-1-(tetrahydro-1,1-dioxido-3-thienyl)-, sodium salt (1:1) 1H-Pyrazole-3-carboxamide, 4-[5-[1,5-dihydro-3-[[(2-hydroxyethyl)amino]carbonyl]-5-oxo-1-(tetrahydro-1,1-dioxido-3-thienyl)-4H-pyrazol-4-ylidene]-1,3-pentadien-1-yl]-5-hydroxy-N-(2-hydroxyethyl)-1-(tetrahydro-1,1-dioxido-3-thienyl)-, sodium salt (1:1) 1020729-05-8 C25H33N6NaO10S2
Benzene, 1-chloro-4-(methoxymethoxy)-2-methyl- Benzene, 1-chloro-4-(methoxymethoxy)-2-methyl- 928025-22-3 C9H11ClO2
(S)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole (S)-4-iodo-1-(pyrrolidin-3-yl)-1H-pyrazole
 4-(4-Bromophenyl)-4-piperidinol 4-(4-Bromophenyl)-4-piperidinol 57988-58-6 C11H14BrNO
1,3-Benzenedicarboxylic acid, 5-[(5-pyrimidinylcarbonyl)amino]- 1,3-Benzenedicarboxylic acid, 5-[(5-pyrimidinylcarbonyl)amino]- 1973826-31-1 C13H9N3O5
N-(2-AMINO-4-TRIFLUOROMETHYLPHENYL)PYRROLIDINE N-(2-AMINO-4-TRIFLUOROMETHYLPHENYL)PYRROLIDINE 133184-80-2 C11H13F3N2
Pyridine, 2-(4,5-dihydro-2-oxazolyl)- (9CI) Pyridine, 2-(4,5-dihydro-2-oxazolyl)- (9CI) 119165-69-4 C8H8N2O
2-Pyrimidinemethanamine, 5-ethyl-4,6-dimethyl- 2-Pyrimidinemethanamine, 5-ethyl-4,6-dimethyl- 1340495-16-0 C9H15N3
Thieno[2,3-d]pyrimidine-6-carboxylic acid, 2,4-diamino- (9CI) Thieno[2,3-d]pyrimidine-6-carboxylic acid, 2,4-diamino- (9CI) 155087-28-8 C7H6N4O2S
Pyrimidine, 4-chloro-2-fluoro- (9CI) Pyrimidine, 4-chloro-2-fluoro- (9CI) 51422-00-5 C4H2ClFN2
tert-butyl2-(piperazin-1-yl)ethylcarbamate tert-butyl2-(piperazin-1-yl)ethylcarbamate 112758-89-1 C13H14N2
2-Quinazolinamine 2-Quinazolinamine 1687-51-0 C8H7N3
1H-Benzimidazole-6-carboxaldehyde, 1-methyl- (9CI) 1H-Benzimidazole-6-carboxaldehyde, 1-methyl- (9CI) 181867-19-6 C9H8N2O
(S)-2-AMINOMETHYL-1-N-CBZ-PYRROLIDINE
(S)-2-AMINOMETHYL-1-N-CBZ-PYRROLIDINE 141774-68-7 C13H18N2O2
Hexamethylol melamine Hexamethylol melamine C9H22N6O6
2,2'-Bioxazole, 4,4',5,5'-tetrahydro-4,4'-di-2-naphthalenyl-, (4S,4'S)- 2,2'-Bioxazole, 4,4',5,5'-tetrahydro-4,4'-di-2-naphthalenyl-, (4S,4'S)- 2567868-01-1 C26H20N2O2
A549/FU A549/FU
5-Chloroimidazo[1,2-a]pyridine-2-carboxylic acid 5-Chloroimidazo[1,2-a]pyridine-2-carboxylic acid 1000017-93-5 C8H5ClN2O2
3-Pyrrolidinemethanamine,N-cyclopropyl-4-fluoro-,(3R,4S)-(9CI) 3-Pyrrolidinemethanamine,N-cyclopropyl-4-fluoro-,(3R,4S)-(9CI) 604798-54-1 C8H15FN2
1H-Benzimidazol-5-amine,4-chloro-6-fluoro-(9CI) 1H-Benzimidazol-5-amine,4-chloro-6-fluoro-(9CI) 117275-51-1 C7H5ClFN3
1H-Benzimidazole,2-(2-pyrrolidinyl)-,(R)-(9CI) 1H-Benzimidazole,2-(2-pyrrolidinyl)-,(R)-(9CI) 175530-90-2 C11H13N3
1H-Benzimidazol-2-amine,4,6-dimethyl-(9CI) 1H-Benzimidazol-2-amine,4,6-dimethyl-(9CI) 67469-39-0 C9H11N3
4-PHENYLPYRAZOLE 4-PHENYLPYRAZOLE 10199-68-5 C9H8N2
4-Bromoquinazoline 4-Bromoquinazoline 354574-59-7 C8H5BrN2
1,3-Dimethyl-5-hydroxypyrazole 1,3-Dimethyl-5-hydroxypyrazole 5203-77-0 C5H8N2O
3-Amino-5-cyclobutyl-1H-pyrazole 3-Amino-5-cyclobutyl-1H-pyrazole 326827-21-8 C7H11N3
7-BROMO-2-METHYLQUINAZOLINE 7-BROMO-2-METHYLQUINAZOLINE 552331-87-0 C9H7BrN2
2-Chloro-7-fluoroquinazoline 2-Chloro-7-fluoroquinazoline 956101-10-3 C8H4ClFN2
Cyclopropanecarboxylic acid [4-(4,6-dichloropyrimidin-2-ylsulfanyl)phenyl]amide Cyclopropanecarboxylic acid [4-(4,6-dichloropyrimidin-2-ylsulfanyl)phenyl]amide 639090-53-2 C14H11Cl2N3OS
4-AMINO-3-FORMYLPYRIDINE HCL 4-AMINO-3-FORMYLPYRIDINE HCL 927891-97-2 C6H6N2O·HCl
N-(2,2,2-trifluoroethyl)pyrrolidine-2-carboxamide hydrochloride N-(2,2,2-trifluoroethyl)pyrrolidine-2-carboxamide hydrochloride 1078163-20-8 C7H12ClF3N2O
METHDILAZINE (200 MG) METHDILAZINE (200 MG) 1982-37-2 C18H20N2S
2,4(1H,3H)-Pyrimidinedione, 1-ethenyl- 2,4(1H,3H)-Pyrimidinedione, 1-ethenyl- 15765-17-0 C6H6N2O2
2,2'-Bioxazole, 4,4'-dicyclohexyl-4,4',5,5'-tetrahydro-, (4S,4'S)- 2,2'-Bioxazole, 4,4'-dicyclohexyl-4,4',5,5'-tetrahydro-, (4S,4'S)- 2368835-34-9 C18H28N2O2
4H-Imidazo[4,5-c]pyridin-4-one, 3,5,6,7-tetrahydro-3-methyl- 4H-Imidazo[4,5-c]pyridin-4-one, 3,5,6,7-tetrahydro-3-methyl- 1369160-23-5 C7 H9 N3 O
10-Bromonaphtho[1,2-b]benzofuran 10-Bromonaphtho[1,2-b]benzofuran 1846601-95-3 C16H9BrO
(2S,3R)-2-Methyl-3-pyrrolidinol (2S,3R)-2-Methyl-3-pyrrolidinol 688736-94-9 C5H11NO
tert-butyl N-methyl-N-[4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)cyclohex-3-en-1-yl]carbamate tert-butyl N-methyl-N-[4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)cyclohex-3-en-1-yl]carbamate 1572399-64-4 C18H32BNO4
ethyl 5-chloro-6-fluoropyrazolo[1,5-a]pyrimidine-3-carboxylate ethyl 5-chloro-6-fluoropyrazolo[1,5-a]pyrimidine-3-carboxylate 2359650-50-1 C9H7ClFN3O2
4-bromo-3-cyclohexyl-1-isopropyl-1H-pyrazole 4-bromo-3-cyclohexyl-1-isopropyl-1H-pyrazole
2,4-dichloro-7-fluoropyrido[3,2-d]pyrimidine 2,4-dichloro-7-fluoropyrido[3,2-d]pyrimidine 1824318-03-7 C7H2Cl2FN3
6-(2,2-Difluoropropyl)thieno[2,3-d]pyrimidin-4(3H)-one 6-(2,2-Difluoropropyl)thieno[2,3-d]pyrimidin-4(3H)-one 2163772-41-4 C9H8F2N2OS
4-Chloro-6-methyl-2-(2,2,2-trifluoroethyl)-2H-pyrazolo[3,4-d]pyrimidine 4-Chloro-6-methyl-2-(2,2,2-trifluoroethyl)-2H-pyrazolo[3,4-d]pyrimidine 2163771-92-2 C8H6ClF3N4
2-Amino-5-(trifluoromethyl)thieno[2,3-d]pyrimidin-4(1H)-one 2-Amino-5-(trifluoromethyl)thieno[2,3-d]pyrimidin-4(1H)-one 1423165-37-0 C7H4F3N3OS
1-(4-METHYLBENZYL)-1H-BENZIMIDAZOLE-2-CARBALDEHYDE 1-(4-METHYLBENZYL)-1H-BENZIMIDAZOLE-2-CARBALDEHYDE 537010-30-3 C16H14N2O
6-amino-1-((2S,4R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-hydroxypyrrolidin-1-yl)hexan-1-one 6-amino-1-((2S,4R)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-hydroxypyrrolidin-1-yl)hexan-1-one
5H-indeno[1,2-b]pyridine 5H-indeno[1,2-b]pyridine 244-99-5 C12H9N
N,N-dimethylthio-2-thioxoimidazolidine-1-carboxamide N,N-dimethylthio-2-thioxoimidazolidine-1-carboxamide 935-75-1 C6H11N3OS3
2-(pyrrolidinyl)pyrimidin-4-amine 2-(pyrrolidinyl)pyrimidin-4-amine 33851-99-9 C8H12N4
2,5-Bis(octyldithio)-1,3,4-thiadiazole 2,5-Bis(octyldithio)-1,3,4-thiadiazole 13539-13-4 C18H34N2S5
4,5-dihydro-2-vinyl-1H-imidazole 4,5-dihydro-2-vinyl-1H-imidazole 10577-96-5 C5H8N2
4-(2,5-dibutoxy-4-nitrophenyl)morpholine 4-(2,5-dibutoxy-4-nitrophenyl)morpholine 86-15-7 C18H28N2O5
2,6-Pyridinedicarboxamide, N2,N6-bis[(diethylamino)thioxomethyl]- 2,6-Pyridinedicarboxamide, N2,N6-bis[(diethylamino)thioxomethyl]- 320408-75-1 C17H25N5O2S2
4,4,4',4',5,5,5',5'-octaethyl-2,2'-bi(1,3,2-dioxaborolane) 4,4,4',4',5,5,5',5'-octaethyl-2,2'-bi(1,3,2-dioxaborolane) 2247367-07-1 C20H40B2O4
L-Proline, 1-(2-naphthalenylacetyl)- (9CI) L-Proline, 1-(2-naphthalenylacetyl)- (9CI) 130654-11-4 C17H17NO3
3H-Imidazo[4,5-c]pyridine-3,5,6(4H)-tricarboxylic acid, 6,7-dihydro-, 3,5-bis(1,1-dimethylethyl) ester, (6S)- 3H-Imidazo[4,5-c]pyridine-3,5,6(4H)-tricarboxylic acid, 6,7-dihydro-, 3,5-bis(1,1-dimethylethyl) ester, (6S)- 1415602-89-9 C17H25N3O6
Pyrimidine, 5-bromo-4-(difluoromethyl)- Pyrimidine, 5-bromo-4-(difluoromethyl)- 1780524-96-0 C5H3BrF2N2
5-isopropyluracil 5-isopropyluracil 17432-95-0 C7H10N2O2
Piperazine, 1-(bromoacetyl)-4-methyl- (9CI) Piperazine, 1-(bromoacetyl)-4-methyl- (9CI) 112257-15-5 C7H13BrN2O
Pyridine, 4-ethyl-3-fluoro- (9CI) Pyridine, 4-ethyl-3-fluoro- (9CI) 137234-73-2 C7H8FN
(2R,4R)-4-fluoro-2-methylpyrrolidine (2R,4R)-4-fluoro-2-methylpyrrolidine
Formamide, N-1H-benzimidazol-4-yl- (9CI) Formamide, N-1H-benzimidazol-4-yl- (9CI) 137654-47-8 C8H7N3O
(2S,4S)-4-fluoro-2-methylpyrrolidine hydrochloride (2S,4S)-4-fluoro-2-methylpyrrolidine hydrochloride 2828444-34-2 C5H11ClFN
2-pyridin-2-ylpyrimidine-5-carboxylic acid 2-pyridin-2-ylpyrimidine-5-carboxylic acid 933988-22-8 C10H7N3O2
Pyrimidine, 5-(bromomethyl)-2-(trifluoromethyl)- (9CI) Pyrimidine, 5-(bromomethyl)-2-(trifluoromethyl)- (9CI) 198404-35-2 C6H4BrF3N2
2,5-Dimethyl-1H-imidazole-4-carboxaldehyde 2,5-Dimethyl-1H-imidazole-4-carboxaldehyde 68282-52-0 C6H8N2O
2-triisopropylsilyl oxazole 2-triisopropylsilyl oxazole 433332-27-5 C12H23NOSi
Domazoline Domazoline 6043-01-2 C14H20N2O2
2-(2-HYDROXYPHENYL)BENZOXAZOLE 2-(2-HYDROXYPHENYL)BENZOXAZOLE 835-64-3 C13H9NO2
2-(2,6-dioxopiperidin-3-yl)-5-(3-(hydroxymethyl)pyrrolidin-1-yl)isoindoline-1,3-dione 2-(2,6-dioxopiperidin-3-yl)-5-(3-(hydroxymethyl)pyrrolidin-1-yl)isoindoline-1,3-dione
2-(1-TRITYL-1H-IMIDAZOL-4-YL)-ETHYLAMINE HYDRATE 2-(1-TRITYL-1H-IMIDAZOL-4-YL)-ETHYLAMINE HYDRATE 195053-92-0 C24H23N3
8-METHYL-IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 8-METHYL-IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLIC ACID 88751-05-7 C9H8N2O2
2,2'-Bioxazole, 4,4'-bis(4-fluorophenyl)-4,4',5,5'-tetrahydro-, (4S,4'S)- 2,2'-Bioxazole, 4,4'-bis(4-fluorophenyl)-4,4',5,5'-tetrahydro-, (4S,4'S)- 2567867-99-4 C18H14F2N2O2
1-(4-BROMOBENZYL)-1H-IMIDAZOLE 1-(4-BROMOBENZYL)-1H-IMIDAZOLE 72459-46-2 C10H9BrN2
NA NA 568591-00-4
9-phenyl-1,7-diazabicyclo[4.3.0]nona-2,4,6,8-tetraene 9-phenyl-1,7-diazabicyclo[4.3.0]nona-2,4,6,8-tetraene 92961-15-4 C13H10N2
1-METHYL-4-(TRIFLUOROMETHYL)-1H-IMIDAZOLE-2-CARBOXYLIC ACID 1-METHYL-4-(TRIFLUOROMETHYL)-1H-IMIDAZOLE-2-CARBOXYLIC ACID 1554401-44-3 C6H5F3N2O2
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