9-Fluorenylmethyl N-hydroxycarbamate

Chemical Properties

White solid

Uses

9-Fluorenylmethyl N-hydroxycarbamate (Fmoc-NHOH) can be used as a reactant to prepare:

• N-Fmoc-aminooxy-2-chlorotrityl polystyrene, a solid-phase resin used to produce hydroxamic acids and peptidyl hydroxamic acids.
• 9-Fluorenylmethyl nosyloxycarbamate (Fmoc-NHONs) by reacting with nosyl chloride.

Synthesis

82911-69-1

190656-01-0

The general procedure for the synthesis of (9H-fluoren-9-yl)methyl hydroxycarbamate from 9-fluorenylmethyl-N-succinimidyl carbonate was as follows: first, hydroxylamine hydrochloride (834 mg, 12 mmol) was dissolved in 40 mL of aqueous sodium bicarbonate (2.2 g, 26 mmol), and the solution was cooled to 5 °C. Subsequently, N-(9-fluorenylmethoxycarbonyloxy)succinimide (Fmoc-OSu, 4.0 g, 12 mmol) dissolved in 40 mL of ethyl acetate was slowly added dropwise to the rapidly stirring hydroxylamine solution under ice bath conditions. The reaction mixture was stirred at room temperature for 4 h. The progress of the reaction was monitored by thin-layer chromatography (TLC) (unfolding reagent: ethyl acetate/hexane = 1:1, Rf = 0.4). After completion of the reaction, the aqueous layer was separated and the organic layer was washed sequentially with saturated aqueous potassium bisulfate and brine. The organic extract was concentrated under high vacuum and subsequently ground in hexane to afford N-Fmoc-protected hydroxylamine (Fmoc-NHOH) as a white crystalline solid in 80% yield. The structure of the product was confirmed by 1H NMR (JNM-LA300 spectrometer, JEOL Ltd, Tokyo, Japan): δH (CDCl3) 4.21 (1H, t, Fmoc CH), 4.32 (2H, d, Fmoc CH2), 7.28-7.43, 7.68, 7.86 (8H, m, Fmoc Ar.CH). 8.77 (1H, s, NH), 9.75 (1H, br s, OH). Next, the coupling reaction of Fmoc-NHOH (2 eq.) with 2-chlorotrityl chloride (CTC) resin (1.43 mmol/g) in dichloromethane (DCM) was carried out for 48 h with the addition of N,N'-diisopropylethylamine (DIPEA; 4 eq.) as a base. The CTC resin containing Fmoc-NHOH was treated with 10% DIPEA/methanol (v/v) to seal the remaining chloride groups. After filtration, the loading of the resin was determined by Fmoc titration to be 1.0 mmol/g. Subsequently, the resin was treated with 20% piperidine/N-methyl-2-pyrrolidone (NMP) for 30 min to remove the Fmoc protecting groups, and then Fmoc-1-Pro-OH or Fmoc-1-Phe-OH (2 equiv.) was added to the resin at 2-(1H-7-azabenzotriazole-1- based)-1,1,3,3-tetramethyluronium hexafluorophosphate (HATU), 1-hydroxy-7-azabenzotriazole (HOAt), and DIPEA (4 eq.) in the presence of 2-(1H-7-azabenzotriazole-1-yl) for 1.5 h at room temperature. After removing the Fmoc protecting group again with 20% piperidine/NMP, HCA (2 eq.) was coupled with the amino acid-anchored resin in the presence of benzotriazol-1-yl-oxo-tris-(dimethylamino)-hexafluorophosphate (BOP; 2 eq.), hydroxybenzotriazole (HOBt; 2 eq.), and DIPEA (3 eq.) for 5 hr. The final product was cleaved from the resin by 30% trifluoroacetic acid (TFA)/DCM (v/v) for 1 hour. The resin was filtered and the filtrate was concentrated under high vacuum and then precipitated with cold ether. The resulting HCA-Phe-NHOH and HCA-Pro-NHOH were analyzed by QUATTRO Triple Quardrupole Tandem mass spectrometer (Micromass & Waters, Milford, MA, USA) at the National Instrumentation Center for Environmental Management (NICEM) for structural confirmation: CA-Phe-NHOH (m/z calculated: 343.1 [M+H]+; measured: 343.0), CA-Pro-NHOH (m/z calculated: 293.1 [M+H]+; measured: 293.1), DHCA-Phe- NHOH (m/z calculated value: 345.1 [M+H]+; measured value: 345.1), DHCA-Pro-NHOH (m/z calculated value: 295.1 [M+H]+; measured value: 295.1), pCoA-Phe-NHOH (m/z calculated value: 327.1 [M+H]+; measured value: 327.1), pCoA- Pro-NHOH (m/z calculated value: 277.1 [M+H]+; measured value: 277.0), FA-Phe-NHOH (m/z calculated value: 357.1 [M+H]+; measured value: 357.1), FA-Pro-NHOH (m/z calculated value: 307.1 [M+H]+; measured value: 307.0), SA-Phe- NHOH (m/z calculated value: 387.1 [M+H]+; measured value: 387.0), SA-Pro-NHOH (m/z calculated value: 337.1 [M+H]+; measured value: 337.1). A C18 reversed-phase column (120, 5 μm, 4.6 × 250 mm; AAPPTec, Louisville, KY, USA) was used, and the product was analyzed by RP-HPLC (Thermo Scientific Spectra System AS300; Thermo-Fisher, Waltham, MA, USA) Product purity was analyzed. The elution conditions were as follows: mobile phase A: 0.1% TFA/water, mobile phase B: 0.1% TFA/acetonitrile, gradient elution: from 10% B to 90% B in 30 min, flow rate: 1.0 mL/min; detection wavelength: UV, 280 or 326 nm. HCA-Phe-NHOH was purified by semi-preparative RP-HPLC columns using an A to B gradient (A: 0.1% TFA aqueous solution, B: 0.1% TFA in acetonitrile; 10% to 90% B for 30 min at a flow rate of 4.0 mL/min) followed by freeze-drying.

References

[1] Bioorganic and Medicinal Chemistry Letters, 2013, vol. 23, # 4, p. 1136 - 1142