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DMT-dA(bz) Phosphoramidite

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DMT-dA(bz) Phosphoramidite manufacturers

  • DMT-dA(Bz)-CE
  • DMT-dA(Bz)-CE pictures
  • 2024-08-08
  • CAS:98796-53-3
  • Min. Order: 10g
  • Purity: ≥99%
  • Supply Ability: 20tons
DMT-dA(bz) Phosphoramidite Basic information
Physical form Color
Product Name:DMT-dA(bz) Phosphoramidite
Synonyms:DMT-dA(bz) PhosphoraMidite;N6-Benzoyl-2'-deoxy-3'-O-DMT-adenosine 5'-CE phosphoramidite;N6-Benzoyl-2'-deoxy-5'-O-DMT-adenosine 3'-CE phosphoramidite;2'DEOXYADENOSINE PHOSPHORAMADITE;2'-DEOXYADENOSINE PHOSPHORAMIDITE;dA(N-Bz) Phosphoramidite;N-blocked-5'-O-DMT 3'-CED deoxyadenosine phosphoramidite;(2R,3S,5R)-5-(6-benzamido-9H-purin-9-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)tetrahydrofuran-3-yl 2-cyanoethyl diisopropylphosphoramidite
CAS:98796-53-3
MF:C47H52N7O7P
MW:857.93
EINECS:685-521-7
Product Categories:Pharmaceutical;RNAi;Amidite
Mol File:98796-53-3.mol
DMT-dA(bz) Phosphoramidite Structure
DMT-dA(bz) Phosphoramidite Chemical Properties
density 1.23 at 20℃
vapor pressure 0-0Pa at 20-50℃
storage temp. Sealed in dry,2-8°C
solubility soluble, clear
form powder or granules
pka7.87±0.43(Predicted)
color white to off-white
biological sourcenon-animal source (no BSE/TSE risk)
Water Solubility soluble, clear
InChIKeyGGDNKEQZFSTIMJ-AKWFTNRHSA-N
SMILESO(C(C1=CC=C(OC)C=C1)(C1=CC=C(OC)C=C1)C1=CC=CC=C1)C[C@H]1O[C@@H](N2C3C(=C(N=CN=3)NC(=O)C3=CC=CC=C3)N=C2)C[C@@H]1OP(N(C(C)C)C(C)C)OCCC#N
LogP7.14 at 20℃
Safety Information
WGK Germany 3
HS Code 29349990
Storage Class11 - Combustible Solids
MSDS Information
DMT-dA(bz) Phosphoramidite Usage And Synthesis
Physical formPowder or granules
ColorWhite to off-white
General Description DMT-dA(bz) Phosphoramidite belongs to the group of DNA Phosphoramidites. Its key features include:
Exocyclic amine functions are protected by a benzoyl group (dA(bz) anddC(bz)) or isobutyryl group (dG(ib)).
Recommended cleavage and deprotection conditions are 8 hours at 55 °Cor 24 hours at room temperature using concentrated ammonia solution,for standard base-protected oligonucleotides.
The high coupling efficiency of Proligo′s DNA phosphoramidites leads tohigh-yield and high-quality oligonucleotides.
UsesN6-Benzoyl-2’-deoxy-5’-O-DMT-cytidine 3’-CE Phosphoramidite is used to prepare antisense oligonucleotides containing conformationally constrained methoxyaminomethylene and aminooxymethylene and aminomethylene bridged nucleoside analogs.
Synthesis
Phosphorodiamidous acid, N,N'-bis(1-methylethyl)-, 2-cyanoethyl ester

131420-63-8

N6-Benzoyl-5'-O-(4,4'-dimethoxytrityl)-2'-deoxyadenosine

64325-78-6

DMT-dA(bz) Phosphoramidite

98796-53-3

Synthesis of (2R,3S,5R)-5-(6-benzoylamino-9H-purin-9-yl)-2-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-hydroxytetrahydrofuran-2-yl)-9H-purin-6-yl)benzamide from N-(9-((2R,4S,5R)-5-((bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4- hydroxytetrahydrofuran-2-yl)-9H-purin-6-yl)benzamide: The general procedure for synthesizing (2R,3S,5R)-5-(6-benzoylamino-9H-purin-9-yl)-2-((bis(4-methoxyphenyl)(phenyl) Methoxy)methyl)tetrahydrofuran-3-yl(2-cyanoethyl)diisopropylphosphoramidite was carried out in the following general steps: the nucleoside was phosphorylated using the N-methylimidazole salts of [O-β-cyanoethyl-N,N,N',N'-tetraisopropylphosphoramidite] and saccharin as the activators. This was done as follows: nucleoside (1.5 mmol) was added in a flask of appropriate size and the solid was dried by azeotropic distillation twice (using a rotary evaporator) with 20 mL of pyridine. After purging the flask with argon, 15 mL of acetonitrile was added. The mixture was stirred at room temperature until a clarified solution was formed. Subsequently, [O-β-cyanoethyl-N,N,N',N'-tetraisopropylphosphoramidite] (Tetraphos) was added to the solution, followed by the N-methylimidazole salt of saccharin. The reaction mixture was stirred continuously at room temperature and the progress of the reaction was monitored by HPLC. Upon completion of the reaction, the mixture was diluted with 30 mL of ethyl acetate and the organic phase was washed sequentially with 2 x 25 mL of saturated aqueous sodium bicarbonate and 25 mL of saturated aqueous sodium chloride. The organic layer was separated and dried with anhydrous magnesium sulfate. The dried suspension was filtered and the solvent was removed using a rotary evaporator. Finally, the residue was dried under vacuum to obtain the target product as a foamy solid.

References[1] Patent: WO2004/35599, 2004, A1. Location in patent: Page 9-10
[2] Patent: WO2004/35599, 2004, A1. Location in patent: Page 10-11
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