Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
OXO-PYRROLIDIN-1-YL-ACETIC ACID OXO-PYRROLIDIN-1-YL-ACETIC ACID 49791-37-9 C6H9NO3
4-(1H-imidazol-1-yl)pyridine 4-(1H-imidazol-1-yl)pyridine 25700-16-7 C8H7N3
5-Thiazolamine,  2-(1-methylethyl)- 5-Thiazolamine, 2-(1-methylethyl)- 933683-64-8 C6H10N2S
5-Thiazolol 5-Thiazolol 77075-76-4 C3H3NOS
2-Bromo-1-methyl-1H-imidazole-4-carboxylic  acid 2-Bromo-1-methyl-1H-imidazole-4-carboxylic acid 852181-03-4 C5H5BrN2O2
2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-(vinyl-d3)pyridine 2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-(vinyl-d3)pyridine 3124423-70-4
5-bromo-2-(tetrahydro-2H-pyran-4-yl-d9)pyridine-3,4,6-d3 5-bromo-2-(tetrahydro-2H-pyran-4-yl-d9)pyridine-3,4,6-d3 3124634-74-5
2,4-dichloro-6-(methoxy-d3)pyridine-3,5-d2 2,4-dichloro-6-(methoxy-d3)pyridine-3,5-d2 3124634-89-2
4-bromo-3-cyclopropylpyridine-2,5,6-d3 4-bromo-3-cyclopropylpyridine-2,5,6-d3 3124635-31-7
4-(pyrrolidin-2-yl-2,3,3,4,4,5,5-d7)pyridine-2,3,5,6-d4 4-(pyrrolidin-2-yl-2,3,3,4,4,5,5-d7)pyridine-2,3,5,6-d4 3124619-39-9
2-(5-bromofuran-2-yl-3,4-d2)pyrrolidine-2,3,3,4,4,5,5-d7 2-(5-bromofuran-2-yl-3,4-d2)pyrrolidine-2,3,3,4,4,5,5-d7 3124619-59-3
5-bromo-7-(methyl-d3)-3H-imidazo[4,5-b]pyridine-2,6-d2 5-bromo-7-(methyl-d3)-3H-imidazo[4,5-b]pyridine-2,6-d2 3124619-74-2
2-bromo-6-(bromomethyl-d2)pyridine-3,4,5-d3 2-bromo-6-(bromomethyl-d2)pyridine-3,4,5-d3 3124620-15-8
4-Amino-5'-bromo-2,2'-bipyridine 4-Amino-5'-bromo-2,2'-bipyridine 1185309-68-5
4,4'-Diamino-6-chloro-2,2'-bipyridine 4,4'-Diamino-6-chloro-2,2'-bipyridine 1185310-38-6 C10H9ClN4
(4-(tetrahydrofuran-3-yl)-3-(trifluoromethyl)phenyl)boronic acid (4-(tetrahydrofuran-3-yl)-3-(trifluoromethyl)phenyl)boronic acid 2256747-70-1 C11H12BF3O3
5-bromo-1-cyclopropyl-4-methyl-1H-1,2,3-triazole 5-bromo-1-cyclopropyl-4-methyl-1H-1,2,3-triazole 3124620-77-2
4-bromo-5-ethyl-2-isopropyl-2H-1,2,3-triazole 4-bromo-5-ethyl-2-isopropyl-2H-1,2,3-triazole 3124620-82-9
5-bromo-4-cyclopropyl-1-isopropyl-1H-1,2,3-triazole 5-bromo-4-cyclopropyl-1-isopropyl-1H-1,2,3-triazole 3124620-96-5
N-phenyl-1,10-phenanthrolin-2-amine N-phenyl-1,10-phenanthrolin-2-amine 861005-72-3
3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-vinylpyridine 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4-vinylpyridine 3124585-57-2
5-(BROMOMETHYL)OXAZOLE 5-(BROMOMETHYL)OXAZOLE 127232-42-2 C4H4BrNO
CHEMBRDG-BB 4003804 CHEMBRDG-BB 4003804 99858-80-7 C11H15NO
2-BUTYL-1,3,2-DIOXABOROLANE-4S,5S-DICARBOXYLIC ACID BIS(DIMETHYLAMIDE) 2-BUTYL-1,3,2-DIOXABOROLANE-4S,5S-DICARBOXYLIC ACID BIS(DIMETHYLAMIDE) 161344-84-9 C12H23BN2O4
4-chloro-5-methoxy-2-(4-pyridinyl)pyrimidine 4-chloro-5-methoxy-2-(4-pyridinyl)pyrimidine 133661-38-8 C10H8ClN3O
5,6,7,8-Tetrahydro-imidazo[1,2-a]pyrazine-2-carboxylic acid ethyl ester 5,6,7,8-Tetrahydro-imidazo[1,2-a]pyrazine-2-carboxylic acid ethyl ester 91476-82-3 C9H13N3O2
ethyl 4-amino-5-methylthieno[2,3-d]pyrimidine-6-carboxylate ethyl 4-amino-5-methylthieno[2,3-d]pyrimidine-6-carboxylate 60598-74-5 C10H11N3O2S
3,3'-Bi(1H-pyrazole) 3,3'-Bi(1H-pyrazole) 2384-02-3 C6H6N4
CHEMBRDG-BB 6423830 CHEMBRDG-BB 6423830 83490-13-5 C13H10N2O2
4-Ethyl-4H-1,2,4-triazol-3-amine 4-Ethyl-4H-1,2,4-triazol-3-amine 42786-06-1 C4H8N4
1H-Indole, 3-bromo-1,2-diphenyl- 1H-Indole, 3-bromo-1,2-diphenyl- 1793057-98-3 C20H14BrN
4-Propylthiazole 4-Propylthiazole 41981-60-6 C6H9NS
1-CBZ-3-HYDROXYMETHYLPYRROLIDINE 1-CBZ-3-HYDROXYMETHYLPYRROLIDINE 315718-05-9 C13H17NO3
N-(2-Bromoethyl)phthalimide N-(2-Bromoethyl)phthalimide 574-98-1 C10H8BrNO2
2-(Aminomethyl)-1-Boc-piperidine 2-(Aminomethyl)-1-Boc-piperidine 370069-31-1 C11H22N2O2
5-Thiazolamine,  4-methyl- 5-Thiazolamine, 4-methyl- 72632-65-6 C4H6N2S
Imidazo[1,2-a]pyridin-7-ol Imidazo[1,2-a]pyridin-7-ol 896139-85-8 C7H6N2O
tert-butyl 4-(5,6-dichloro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)piperidine-1-carboxylate tert-butyl 4-(5,6-dichloro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)piperidine-1-carboxylate 2133455-48-6 C17H21Cl2N3O3
2,6-diphenyl-4(3H)-pyrimidinone 2,6-diphenyl-4(3H)-pyrimidinone 15969-46-7 C16H12N2O
2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5-vinylpyridine-3,4,6-d3 2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5-vinylpyridine-3,4,6-d3 3124423-77-1
3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5-(vinyl-d3)pyridine 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5-(vinyl-d3)pyridine 3124423-82-8
3-bromo-5-cyclopropylpyridine-2,4,6-d3 3-bromo-5-cyclopropylpyridine-2,4,6-d3 3124635-28-2
4-(pyrrolidin-2-yl)pyridine-2,3,5,6-d4 4-(pyrrolidin-2-yl)pyridine-2,3,5,6-d4 3124619-36-6
6-bromo-3-chloro-2-fluoropyridine-4,5-d2 6-bromo-3-chloro-2-fluoropyridine-4,5-d2 3124619-77-5
4,5-dibromo-2-(methyl-d3)pyridine-3,6-d2 4,5-dibromo-2-(methyl-d3)pyridine-3,6-d2 3124620-12-5
4-bromo-2-(bromomethyl-d2)pyridine-3,5,6-d3 4-bromo-2-(bromomethyl-d2)pyridine-3,5,6-d3 3124620-17-0
3-(1-(methyl-d3)pyrrolidin-2-yl-2,5,5-d3)pyridine 3-(1-(methyl-d3)pyrrolidin-2-yl-2,5,5-d3)pyridine 2241872-20-6 C10H8D6N2
4-Amino-4'-methoxycarbonyl-2,2'-bipyridine 4-Amino-4'-methoxycarbonyl-2,2'-bipyridine 1185309-81-2 C12H11N3O2
5-bromo-1,4-diisopropyl-1H-1,2,3-triazole 5-bromo-1,4-diisopropyl-1H-1,2,3-triazole 3124620-74-9
2-benzhydryl-4-bromo-5-cyclopropyl-2H-1,2,3-triazole 2-benzhydryl-4-bromo-5-cyclopropyl-2H-1,2,3-triazole 3124620-88-5
2-benzhydryl-4-bromo-5-(prop-1-en-2-yl)-2H-1,2,3-triazole 2-benzhydryl-4-bromo-5-(prop-1-en-2-yl)-2H-1,2,3-triazole 3124620-93-2
4-chloro-2-(oxetan-3-yl)-5-(trifluoromethyl)pyridine 4-chloro-2-(oxetan-3-yl)-5-(trifluoromethyl)pyridine 3124621-07-1
1,3,5-Triazine 1,3,5-Triazine 290-87-9 C3H3N3
1-Oxa-6-azaspiro[2.5]octane-6-carboxylic acid, 2-(4,4,5,5-tetramethyl-1,3,2-diox… 1-Oxa-6-azaspiro[2.5]octane-6-carboxylic acid, 2-(4,4,5,5-tetramethyl-1,3,2-diox… 3052972-71-8 C17H30BNO5
2,4-DICHLORO-5-FLUOROQUINAZOLINE 2,4-DICHLORO-5-FLUOROQUINAZOLINE 87611-00-5 C8H3Cl2FN2
6,8-Dibromo-2-trifluoromethylimidazo[1,2-a]pyrazine 6,8-Dibromo-2-trifluoromethylimidazo[1,2-a]pyrazine 1208082-24-9 C7H2Br2F3N3
5-(Trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylic acid 5-(Trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylic acid 1260798-62-6 C9H5F3N2O2
BOC-4-HYDROXY-L-PYRROLIDINE LACTONE BOC-4-HYDROXY-L-PYRROLIDINE LACTONE 113775-22-7 C10H15NO4
4-(1-BUTENYL PENTENYL) PYRIDINE 4-(1-BUTENYL PENTENYL) PYRIDINE 2057-34-3 C14H19N
1(2H)-Pyridinecarboxylic acid, 4-bromo-2-oxo-, 1,1-dimethylethyl ester 1(2H)-Pyridinecarboxylic acid, 4-bromo-2-oxo-, 1,1-dimethylethyl ester 1160790-27-1 C10H12BrNO3
Pyrimidine, 5-bromo-2-(4,4-difluoro-1-piperidinyl)- Pyrimidine, 5-bromo-2-(4,4-difluoro-1-piperidinyl)- 494772-37-1 C9H10BrF2N3
Benzonitrile, 3-[3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazol-1-yl]- Benzonitrile, 3-[3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazol-1-yl]- 2223050-63-1 C16H18BN3O2
1,1'-bis(4-cyanophenyl)-[4,4'-bipyridine]-1,1'-diium chloride 1,1'-bis(4-cyanophenyl)-[4,4'-bipyridine]-1,1'-diium chloride 31515-20-5 C24H16ClN4+
6-AMino-1-isobutyl-3-Methyl-5-nitroso-2,4-pyriMidinedione 6-AMino-1-isobutyl-3-Methyl-5-nitroso-2,4-pyriMidinedione 54052-67-4 C9H14N4O3
tetrahydro-4-hydroxy-6-isopropyl-5,5-dimethyl-1H-pyrimidin-2-one tetrahydro-4-hydroxy-6-isopropyl-5,5-dimethyl-1H-pyrimidin-2-one 14068-64-5 C9H18N2O2
methyl (S)-2,5-dioxooxazolidine-4-propionate methyl (S)-2,5-dioxooxazolidine-4-propionate 1663-47-4 C7H9NO5
4-[2-(methylthio)ethyl]oxazolidine-2,5-dione 4-[2-(methylthio)ethyl]oxazolidine-2,5-dione 5840-77-7 C6H9NO3S
4-Quinazolineacetic acid, 8-bromo- 4-Quinazolineacetic acid, 8-bromo- 1785367-89-6 C10H7BrN2O2
3-pyrrolidin-1-ylandrosta-3,5-dien-17-one 3-pyrrolidin-1-ylandrosta-3,5-dien-17-one 905-30-6 C23H33NO
3-(trifluoromethyl)-5H,6H,7H,8H-imidazo[1,5-a]pyrazine-1-carboxylic acid hydrochloride 3-(trifluoromethyl)-5H,6H,7H,8H-imidazo[1,5-a]pyrazine-1-carboxylic acid hydrochloride 2172053-56-2 C8H9ClF3N3O2
5-bromo-2-ethyl-1,3-oxazole 5-bromo-2-ethyl-1,3-oxazole 1391740-26-3 C5H6BrNO
Methyl 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)furan-2-carboxylate Methyl 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)furan-2-carboxylate 1227664-17-6 C12H17BO5
tetrahydro-1,3-bis(hydroxymethyl)-1H-pyrimidin-2-one tetrahydro-1,3-bis(hydroxymethyl)-1H-pyrimidin-2-one 3270-74-4 C6H12N2O3
4-ethyl-2-methyl-4,5-dihydrothiazole 4-ethyl-2-methyl-4,5-dihydrothiazole 4293-61-2 C6H11NS
[2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl] hydrogen succinate [2-(2-methyl-5-nitro-1H-imidazol-1-yl)ethyl] hydrogen succinate 13182-87-1 C10H13N3O6
(3-((Tetrahydrofuran-2-yl)methoxy)pyridin-4-yl)boronic acid (3-((Tetrahydrofuran-2-yl)methoxy)pyridin-4-yl)boronic acid 2710293-24-4
IID432 IID432 3094992-69-2 C19H19N7O
(3R,5S)-5-(hydroxymethyl)-1-tosylpyrrolidin-3-ol (3R,5S)-5-(hydroxymethyl)-1-tosylpyrrolidin-3-ol 5605-46-9 C12H17NO4S
2,5-Pyrrolidinedione, 3-(5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-1-yl)-4-(1H-indol-3-yl)-, (3S,4S)- 2,5-Pyrrolidinedione, 3-(5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-1-yl)-4-(1H-indol-3-yl)-, (3S,4S)- 905854-03-7 C23H19N3O2
ethyl 7-(difluoromethyl)-5-phenylpyrazolo[1,5-a]pyrimidine-3-carboxylate ethyl 7-(difluoromethyl)-5-phenylpyrazolo[1,5-a]pyrimidine-3-carboxylate 438219-16-0 C16H13F2N3O2
9H-Dibenzo[a,c]carbazole 9H-Dibenzo[a,c]carbazole 201-67-2 C20H13N
3-Amino-4-methyl-4H-1,2,4-triazole 3-Amino-4-methyl-4H-1,2,4-triazole 16681-76-8 C3H6N4
2-CHLORO-5,6-DIMETHYLBENZIMIDAZOLE 2-CHLORO-5,6-DIMETHYLBENZIMIDAZOLE 39791-96-3 C9H9ClN2
1,3 dimethyl-5fluoropyrazol fluoride 1,3 dimethyl-5fluoropyrazol fluoride C5H8F2N2
5-CYCLOPROPYL-3-TRIFLUOROMETHYL-1H-PYRAZOLE 5-CYCLOPROPYL-3-TRIFLUOROMETHYL-1H-PYRAZOLE 1027617-86-2 C7H7F3N2
1,3-pyrrolidinedicarboxylic acid, 4-methyl-, 1-(1,1-dimethylethyl) ester, (3r,4r)-rel- 1,3-pyrrolidinedicarboxylic acid, 4-methyl-, 1-(1,1-dimethylethyl) ester, (3r,4r)-rel- 1253791-53-5 C11H19NO4
1H-1,2,3-Triazole, 5-bromo-1-methyl- 1H-1,2,3-Triazole, 5-bromo-1-methyl- 16681-82-6 C3H4BrN3
5-Bromo-2-(cyclopentyl)pyrimidine 5-Bromo-2-(cyclopentyl)pyrimidine 1215073-31-6 C9H11BrN2
3,3-Diphenyl-3H-naphtho[2,1-b]pyran 3,3-Diphenyl-3H-naphtho[2,1-b]pyran 4222-20-2 C25H18O
4,4'-Bi-4H-1,2,4-triazole
4,4'-Bi-4H-1,2,4-triazole 16227-15-9 C4H4N6
2-chloro-4-methyl-1,3,5-triazine 2-chloro-4-methyl-1,3,5-triazine 444666-43-7 C4H4ClN3
2,4-dichloro-6-(2-pyridinyl)-1,3,5-Triazine 2,4-dichloro-6-(2-pyridinyl)-1,3,5-Triazine 339547-32-9 C8H4Cl2N4
1H-INDAZOLE-3-CARBALDEHYDE 1H-INDAZOLE-3-CARBALDEHYDE 5235-10-9 C8H6N2O
4-(2-methoxyphenyl)pyridin-3-amine 4-(2-methoxyphenyl)pyridin-3-amine 146141-01-7 C12H12N2O
ethyl 2-ethyl-2-methylbutanoate ethyl 2-ethyl-2-methylbutanoate 19945-14-3 C9H18O2
5-(2-methylphenyl)-2(1H)-Pyridinone 5-(2-methylphenyl)-2(1H)-Pyridinone 41216-08-4 C12H11NO
2,4,6-trimethyl-1,3,5-triazine 2,4,6-trimethyl-1,3,5-triazine 823-94-9 C6H9N3
2-Vinyl-1,3-dioxolane 2-Vinyl-1,3-dioxolane 3984-22-3 C5H8O2
3-iodo-4-(3-methyl-1H-pyrazol-1-yl)pyridine 3-iodo-4-(3-methyl-1H-pyrazol-1-yl)pyridine 1374320-90-7
2α-Formylpyrrolidine-1-carboxylic acid benzyl ester 2α-Formylpyrrolidine-1-carboxylic acid benzyl ester 71461-30-8 C13H15NO3
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