Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
5-bromo-2-(1H-imidazol-1-yl-d3)pyridine 5-bromo-2-(1H-imidazol-1-yl-d3)pyridine 2256707-29-4 C8H6BrN3
5-BROMO-2-(1H-PYRROL-1-YL)PYRIDIN-4-AMINE 5-BROMO-2-(1H-PYRROL-1-YL)PYRIDIN-4-AMINE 1381943-77-6 C9H8BrN3
5-BROMO-2-(2-METHYL-1H-IMIDAZOL-1-YL)PYRIDIN-4-AMINE 5-BROMO-2-(2-METHYL-1H-IMIDAZOL-1-YL)PYRIDIN-4-AMINE 1381935-90-5 C9H9BrN4
5-Bromo-2-(2-tolyl)thiazole 5-Bromo-2-(2-tolyl)thiazole 1086382-58-2 C10H8BrNS
5-Bromo-2-(3-thienyl)thiazole 5-Bromo-2-(3-thienyl)thiazole 56421-76-2 C7H4BrNS2
5-Bromo-2-(4-ethylphenyl)thiazole 5-Bromo-2-(4-ethylphenyl)thiazole 1159821-92-7 C11H10BrNS
5-Bromo-2,4-[di(iso-propyl)]thiazole 5-Bromo-2,4-[di(iso-propyl)]thiazole 1643562-66-6 C9H14BrNS
5-Bromo-4-(iso-propyl)-2-ethoxythiazole 5-Bromo-4-(iso-propyl)-2-ethoxythiazole 1643539-16-5 C8H12BrNOS
5-Bromo-4-(n-propyl)-2-(iso-propyl)thiazole 5-Bromo-4-(n-propyl)-2-(iso-propyl)thiazole 1643564-48-0 C9H14BrNS
5-Bromo-4-ethyl-2-(morpholino)thiazole 5-Bromo-4-ethyl-2-(morpholino)thiazole 1643541-97-2 C9H13BrN2OS
5-Bromo-4-ethyl-2-methoxythiazole 5-Bromo-4-ethyl-2-methoxythiazole 1643562-94-0 C6H8BrNOS
5-Bromo-5'-chloro-2,2'-bipyridine 5-Bromo-5'-chloro-2,2'-bipyridine 1185318-16-4 C10H6BrClN2
5-fluoro-2-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-imidazol-1-yl)pyridine 5-fluoro-2-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-imidazol-1-yl)pyridine 2256755-49-2 C14H17BFN3O2
5-fluoro-2-(methyl-d3)pyridine-3,4,6-d3 5-fluoro-2-(methyl-d3)pyridine-3,4,6-d3 2294957-01-8 C6H6FN
5-HYDROXY-2,3'-BIPYRIDINE 5-HYDROXY-2,3'-BIPYRIDINE 1748-06-7 C10H8N2O
6-(4-BROMOPHENYL)PYRIDIN-2-AMINE 6-(4-BROMOPHENYL)PYRIDIN-2-AMINE 1339439-82-5 C11H9BrN2
6-(furan-2-yl)pyridin-2-ol 6-(furan-2-yl)pyridin-2-ol 41220-24-0 C9H7NO2
6-(PIPERIDIN-4-YL)PYRIDIN-3-OL 6-(PIPERIDIN-4-YL)PYRIDIN-3-OL 1196156-23-6 C10H14N2O
6-(tert-butoxy)-N,N-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-amine 6-(tert-butoxy)-N,N-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-2-amine 2256755-23-2 C17H29BN2O3
6-(tetrahydrofuran-2-yl)pyrimidin-4-ol 6-(tetrahydrofuran-2-yl)pyrimidin-4-ol 2090612-30-7 C8H10N2O2
6,6'-DICYCLOPROPYL-2,2'-BIPYRIDINE 6,6'-DICYCLOPROPYL-2,2'-BIPYRIDINE 1434127-15-7 C16H16N2
methyl-d3 5-bromopyrimidine-2-carboxylate-4,6-d2 methyl-d3 5-bromopyrimidine-2-carboxylate-4,6-d2 2259315-67-6 C6H5BrN2O2
tert-butyl 3-(2-chloropyrimidin-5-yl)piperidine-1-carboxylate tert-butyl 3-(2-chloropyrimidin-5-yl)piperidine-1-carboxylate 1563534-12-2 C14H20ClN3O2
tert-butyl 3-(2-hydroxypyrimidin-5-yl)pyrrolidine-1-carboxylate tert-butyl 3-(2-hydroxypyrimidin-5-yl)pyrrolidine-1-carboxylate 2222933-80-2 C13H19N3O3
tert-butyl 3-(5-aminopyrimidin-2-yl)piperidine-1-carboxylate tert-butyl 3-(5-aminopyrimidin-2-yl)piperidine-1-carboxylate 2222933-91-5 C14H22N4O2
tert-butyl 3-(6-aminopyridazin-3-yl)piperidine-1-carboxylate tert-butyl 3-(6-aminopyridazin-3-yl)piperidine-1-carboxylate 2222934-91-8 C14H22N4O2
1-(4-FLUOROPHENYL)IMIDAZOLINE-2-THIONE 1-(4-FLUOROPHENYL)IMIDAZOLINE-2-THIONE 17452-07-2 C9H7FN2S
3-methyl-1H-1,2,4-triazole-5-thiol 3-methyl-1H-1,2,4-triazole-5-thiol 7271-44-5 C3H5N3S
Perfluorophenyl 3-(pyridin-2-yldisulfanyl)propanoate Perfluorophenyl 3-(pyridin-2-yldisulfanyl)propanoate 160580-70-1 C14H8F5NO2S2
1,3,7-triazaspiro[4.5]decane-2,4-dione 1,3,7-triazaspiro[4.5]decane-2,4-dione 78222-09-0 C7H11N3O2
4-CHLORO-2-METHYLTHIOPYRAZOLO[1,5-A]1,3,5-TRIAZINE 4-CHLORO-2-METHYLTHIOPYRAZOLO[1,5-A]1,3,5-TRIAZINE 54346-19-9 C6H5ClN4S
L-CIS-PYRROLIDINE-2,4-DICARBOXYLIC ACID L-CIS-PYRROLIDINE-2,4-DICARBOXYLIC ACID 64927-38-4 C6H9NO4
TRIS(1-PYRROLIDINYL)PHOSPHINE  97 TRIS(1-PYRROLIDINYL)PHOSPHINE 97 5666-12-6 C12H24N3P
RPA 202248 RPA 202248 143701-75-1 C15H12F3NO4S
2-(pyrrolidin-3-yl)-4-(trifluoromethyl)pyridine 2-(pyrrolidin-3-yl)-4-(trifluoromethyl)pyridine 1256822-00-0 C10H11F3N2
2-Amino-4-(tetrahydrofuran-2-yl)pyridine 2-Amino-4-(tetrahydrofuran-2-yl)pyridine 1353853-63-0 C9H12N2O
2-(tetrahydrofuran-2-yl)aniline 2-(tetrahydrofuran-2-yl)aniline 1384979-47-8 C10H13NO
1-Bromo-7-chlorodibenzo[b,d]furan 1-Bromo-7-chlorodibenzo[b,d]furan 2173555-52-5 C12H6BrClO
Pyridine, 2-bromo-6-methyl-3-(trifluoromethyl)- Pyridine, 2-bromo-6-methyl-3-(trifluoromethyl)- 1211536-18-3 C7H5BrF3N
1,3,5-Triazine, 2-chloro-4,6-dimethyl- 1,3,5-Triazine, 2-chloro-4,6-dimethyl- 30894-84-9 C5H6ClN3
8-bromo-5-methyl-[1,2,4]triazolo[4,3-a]pyridine 8-bromo-5-methyl-[1,2,4]triazolo[4,3-a]pyridine 1379355-21-1 C7H6BrN3
(2R,4R)-2-amino-4-butylpentanedioic acid (2R,4R)-2-amino-4-butylpentanedioic acid 1784008-19-0 C12H21NO5
Mc-Val-Cit-PAB-Cl Mc-Val-Cit-PAB-Cl 1639351-92-0 C28H39ClN6O6
(1R,2S,3S)-2-ethoxymethyl-3-(3,4-dichlorophenyl)-tropane (1R,2S,3S)-2-ethoxymethyl-3-(3,4-dichlorophenyl)-tropane
10-chloronaphtho[2,1-b]benzofuran 10-chloronaphtho[2,1-b]benzofuran 2140822-95-1 C16H9ClO
1-Imidazolidineethanol 1-Imidazolidineethanol 77215-47-5 C5H12N2O
3-bromo-7-chlorodibenzo[b,d]furan 3-bromo-7-chlorodibenzo[b,d]furan 2244910-28-7 C12H6BrClO
5-Bromo-4-p-tolylthiazol-2-amine 5-Bromo-4-p-tolylthiazol-2-amine 98946-85-1 C10H9BrN2S
Pyrimidine, 4-chloro-2-methyl-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- Pyrimidine, 4-chloro-2-methyl-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- 2223029-78-3 C11H16BClN2O2
[4,4'-Bi-1,3-dioxolane]-2,2'-dione [4,4'-Bi-1,3-dioxolane]-2,2'-dione 36205-45-5 C6H6O6
1-((1H-pyrazol-1-yl)methyl)-1H-pyrazole 1-((1H-pyrazol-1-yl)methyl)-1H-pyrazole 27258-04-4 C7H8N4
6-(Tert-butylsulfonyl)-3-iodo-7-methoxyimidazo[1,2-a]pyridine 6-(Tert-butylsulfonyl)-3-iodo-7-methoxyimidazo[1,2-a]pyridine 2141961-59-1 C12H15IN2O3S
7-Bromo-4H-pyrazino[1,2-a]pyrimidin-4-one 7-Bromo-4H-pyrazino[1,2-a]pyrimidin-4-one 1848244-17-6 C7H4BrN3O
6-(2,2,2-Trifluoroethyl)thieno[3,2-d]pyrimidin-4(3H)-one 6-(2,2,2-Trifluoroethyl)thieno[3,2-d]pyrimidin-4(3H)-one 2163771-86-4 C8H5F3N2OS
1-tert-Butyl 3-methyl 3-(methylthio)pyrrolidine-1,3-dicarboxylate 1-tert-Butyl 3-methyl 3-(methylthio)pyrrolidine-1,3-dicarboxylate 942190-28-5 C12H21NO4S
Morpholine,2-(1H-pyrrol-3-yl)- Morpholine,2-(1H-pyrrol-3-yl)- 1368812-15-0 C8H12N2O
(1-(pyrrolidin-1-ylmethyl)cyclopropyl)methanol (1-(pyrrolidin-1-ylmethyl)cyclopropyl)methanol 1174666-14-8 C9H17NO
1-(5-bromothiazol-2-yl)azetidin-3-ol 1-(5-bromothiazol-2-yl)azetidin-3-ol 1849282-81-0 C6H7BrN2OS
2-tert-butoxy-4,6-dichloropyrimidine 2-tert-butoxy-4,6-dichloropyrimidine 1289269-99-3 C8H10Cl2N2O
3-Iodo-1H-indazole 3-Iodo-1H-indazole 66607-27-0 C7H5IN2
4-Formylmorpholine 4-Formylmorpholine 4394-85-8 C5H9NO2
2-PIPERIDIN-2-YL-1H-BENZOIMIDAZOLE 2-PIPERIDIN-2-YL-1H-BENZOIMIDAZOLE 51785-23-0 C12H15N3
2,6-Bis[(4R)-4-phenyl-2-oxazolinyl]pyridine 2,6-Bis[(4R)-4-phenyl-2-oxazolinyl]pyridine 128249-70-7 C23H19N3O2
4,5-Dibromo-2,6-dimethyl-pyrimidine 4,5-Dibromo-2,6-dimethyl-pyrimidine 1849223-11-5 C6H6Br2N2
3-(2-HYDROXY-5-METHYLPHENYL)PYRAZOLE 3-(2-HYDROXY-5-METHYLPHENYL)PYRAZOLE 57148-86-4 C10H10N2O
1-BENZYL-4-FLUOROPIPERIDINE 1-BENZYL-4-FLUOROPIPERIDINE 764664-42-8 C12H16FN
1,3-DI-TERT-BUTYLBENZIMIDAZOLIUM CHLORIDE 1,3-DI-TERT-BUTYLBENZIMIDAZOLIUM CHLORIDE 946607-10-9 C15H23ClN2
2-Hydroxy-3-methylpyrazine 2-Hydroxy-3-methylpyrazine 19838-07-4 C5H6N2O
N-[[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl) amino]carbonyl]-1-(1-methylethyl)-1H-Pyrazole-3-sulfonamide N-[[(1,2,3,5,6,7-hexahydro-s-indacen-4-yl) amino]carbonyl]-1-(1-methylethyl)-1H-Pyrazole-3-sulfonamide 1995067-59-8 C19H24N4O3S
Pyrimidine,5,5'-(1,4-phenylene)bis- Pyrimidine,5,5'-(1,4-phenylene)bis- 174303-53-8 C14H10N4
4-Thiazolamine, 5-(3,5-difluorophenyl)- 4-Thiazolamine, 5-(3,5-difluorophenyl)- 1374664-96-6 C9H6F2N2S
4-Thiazolamine, 5-(4-fluoro-2-methylphenyl)- 4-Thiazolamine, 5-(4-fluoro-2-methylphenyl)- 1374665-58-3 C10H9FN2S
1,2,4-Triazolo[4,3-c]pyrimidine, 5-chloro-8-iodo- 1,2,4-Triazolo[4,3-c]pyrimidine, 5-chloro-8-iodo- 2374137-45-6 C5 H2 Cl I N4
Pyrimidine, 4-chloro-2-methyl-5-(trifluoromethyl)- Pyrimidine, 4-chloro-2-methyl-5-(trifluoromethyl)- 2383476-39-7 C6H4ClF3N2
1H-Benzimidazole, 2-(3,5-dibromophenyl)- 1H-Benzimidazole, 2-(3,5-dibromophenyl)- 1242080-87-0 C13H8Br2N2
(3S,4R)-4-(3-fluorophenyl)-1-(2-methoxyethyl)pyrrolidin-3-aminedihydrochloride (3S,4R)-4-(3-fluorophenyl)-1-(2-methoxyethyl)pyrrolidin-3-aminedihydrochloride 1414567-41-1 C13H20ClFN2O
Pyridine, 2,6-bis(1,1-dimethylethoxy)- Pyridine, 2,6-bis(1,1-dimethylethoxy)- 386749-90-2 C13H21NO2
1H-1,2,3-Triazole, 4-bromo-5-methyl-1-(1-methylethyl)- 1H-1,2,3-Triazole, 4-bromo-5-methyl-1-(1-methylethyl)- 1785278-73-0 C6H10BrN3
1-(4-fluoro-2-methylphenyl)pyrrolidine-2,4-dione 1-(4-fluoro-2-methylphenyl)pyrrolidine-2,4-dione 1537294-18-0 C11H10FNO2
916483-67-5 916483-67-5 916483-67-5 C12H18ClNO2
Boronic acid, B-(6-[1,1'-biphenyl]-4-yl-4-dibenzothienyl)- Boronic acid, B-(6-[1,1'-biphenyl]-4-yl-4-dibenzothienyl)- 1858289-81-2 C24H17BO2S
AKOS BC-0114 AKOS BC-0114 373824-30-7 C12H18N2O
2H-Benzimidazol-2-one, 4-bromo-7-fluoro-1,3-dihydro- 2H-Benzimidazol-2-one, 4-bromo-7-fluoro-1,3-dihydro- 1388074-82-5 C7H4BrFN2O
2H-1,2,3-Triazole, 4-bromo-2-ethyl-5-methyl- 2H-1,2,3-Triazole, 4-bromo-2-ethyl-5-methyl- 872265-68-4 C5H8BrN3
1H-Benzimidazole-7-carboxylic acid, 5-bromo-, methyl ester 1H-Benzimidazole-7-carboxylic acid, 5-bromo-, methyl ester 1806517-50-9 C9H7BrN2O2
2-Pyrrolidinone, 3-bromo-1-(1,1-dimethylethyl)- 2-Pyrrolidinone, 3-bromo-1-(1,1-dimethylethyl)- 1343578-30-2 C8H14BrNO
1H-Pyrazole-1-ethanol, 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- 1H-Pyrazole-1-ethanol, 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- 2223027-56-1 C11H19BN2O3
1,1'-((2,3,5,6-tetramethyl-1,4-phenylene)bis(methylene))bis(1H-imidazole) 1,1'-((2,3,5,6-tetramethyl-1,4-phenylene)bis(methylene))bis(1H-imidazole) 1012075-54-5 C18H22N4
4H-1,2,4-Triazole, 3-bromo-4-(4-chlorophenyl)- 4H-1,2,4-Triazole, 3-bromo-4-(4-chlorophenyl)- 2460493-56-3 C8H5BrClN3
9H-Carbazole, 9,9'-[6-[3-(triphenylsilyl)phenyl]-1,3,5-triazine-2,4-diyl]bis- 9H-Carbazole, 9,9'-[6-[3-(triphenylsilyl)phenyl]-1,3,5-triazine-2,4-diyl]bis- 2422045-58-5 C51H35N5Si
4-OXAZOLEMETHANOL, 2-METHYL- 4-OXAZOLEMETHANOL, 2-METHYL- 141567-53-5 C5H7NO2
4-(4-(4-Nitrophenyl)-1-piperazinyl)phenol 4-(4-(4-Nitrophenyl)-1-piperazinyl)phenol 112559-81-6 C16H17N3O3
2-ETHYL-2-ADAMANTYL ACRYLATE 2-ETHYL-2-ADAMANTYL ACRYLATE 303186-14-3 C15H22O2
5-PYRIDIN-3-YLTHIOPHEN-2-AMINE 5-PYRIDIN-3-YLTHIOPHEN-2-AMINE 837376-58-6 C9H8N2S
2,4(1H,3H)-Pyrimidinedione, 1-(4-bromo-3-fluorophenyl)dihydro- 2,4(1H,3H)-Pyrimidinedione, 1-(4-bromo-3-fluorophenyl)dihydro- 1515197-90-6 C10H8BrFN2O2
2,4(1H,3H)-Pyrimidinedione, 1-cyclobutyl- 2,4(1H,3H)-Pyrimidinedione, 1-cyclobutyl- 1797409-28-9 C8H10N2O2
Thiazole, 2-(2-fluorophenyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- Thiazole, 2-(2-fluorophenyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)- 1402174-44-0 C15H17BFNO2S
Pyridine, 5-bromo-2-ethyl-3-methoxy- Pyridine, 5-bromo-2-ethyl-3-methoxy- 1241752-51-1 C8H10BrNO
D-erythro-Pentofuranose, 2-deoxy-4-C-ethynyl-, 1-acetate 3,5-bis(4-methylbenzoate) D-erythro-Pentofuranose, 2-deoxy-4-C-ethynyl-, 1-acetate 3,5-bis(4-methylbenzoate) 2072080-28-3 C25H24O7
1,3,2-Dioxaborolane, 4,4,5,5-tetramethyl-2-[1-[(1-methylethoxy)methyl]ethenyl]- 1,3,2-Dioxaborolane, 4,4,5,5-tetramethyl-2-[1-[(1-methylethoxy)methyl]ethenyl]- 2246782-87-4 C12H23BO3
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